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Acetylxylan esterase from Caldanaerobacter subterraneus subsp. tengcongensis
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2CC0
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 0.1 M CHES-NaOH pH 9.5, 10% PEG3350, 0.022 M strontium chloride
Crystal Properties Matthews coefficient Solvent content 2.82 56.33
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 62.211 α = 90 b = 105.992 β = 90 c = 118.077 γ = 90
Symmetry Space Group I 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2019-07-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL44XU 0.9 SPring-8 BL44XU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 39.71 98.7 0.07 0.994 9.1 3.5 30651
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.94 0.484 0.769 1.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2CC0 1.9 39.71 30647 1531 98.319 0.187 0.1857 0.1954 0.2101 0.2173 38.705
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.001 -0.002 0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.955 r_dihedral_angle_4_deg 18.222 r_dihedral_angle_3_deg 18.152 r_lrange_it 9.179 r_lrange_other 9.155 r_scangle_it 7.895 r_scangle_other 7.873 r_dihedral_angle_1_deg 6.971 r_scbond_it 5.328 r_scbond_other 5.278
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.955 r_dihedral_angle_4_deg 18.222 r_dihedral_angle_3_deg 18.152 r_lrange_it 9.179 r_lrange_other 9.155 r_scangle_it 7.895 r_scangle_other 7.873 r_dihedral_angle_1_deg 6.971 r_scbond_it 5.328 r_scbond_other 5.278 r_mcangle_other 4.997 r_mcangle_it 4.993 r_mcbond_it 3.954 r_mcbond_other 3.92 r_angle_refined_deg 1.822 r_angle_other_deg 1.424 r_nbd_refined 0.214 r_nbd_other 0.19 r_symmetry_nbd_other 0.182 r_nbtor_refined 0.176 r_symmetry_nbd_refined 0.175 r_xyhbond_nbd_refined 0.172 r_symmetry_xyhbond_nbd_refined 0.165 r_chiral_restr 0.099 r_symmetry_nbtor_other 0.083 r_bond_refined_d 0.014 r_gen_planes_refined 0.011 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1488 Nucleic Acid Atoms Solvent Atoms 76 Heterogen Atoms 1
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling MOLREP phasing