☰ Navigation Tabs
Esterase AlinE4 mutant-S13A
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4JGG
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 291.15 1M Sodium acetate, 100mM HEPES, pH 7.5, 50mM Cadmium sulfate
Crystal Properties Matthews coefficient Solvent content 2.34 47.44
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 79.81 α = 90 b = 79.81 β = 90 c = 60.82 γ = 90
Symmetry Space Group P 42 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 80 CCD ADSC QUANTUM 315r 2018-05-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17U1 0.97915 SSRF BL17U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 39.9 99.98 0.049 12.9 2 20382
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.75 1.813 0.104
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT NONE 4JGG 1.75 39.9 20382 1053 99.98 0.124 0.1214 0.1215 0.1774 0.1783 14.497
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.299 0.299 -0.599
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.918 r_dihedral_angle_4_deg 24.879 r_dihedral_angle_3_deg 12.794 r_dihedral_angle_1_deg 5.793 r_scangle_it 4.132 r_scangle_other 4.13 r_lrange_it 3.837 r_lrange_other 3.725 r_scbond_it 3.677 r_scbond_other 3.674
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.918 r_dihedral_angle_4_deg 24.879 r_dihedral_angle_3_deg 12.794 r_dihedral_angle_1_deg 5.793 r_scangle_it 4.132 r_scangle_other 4.13 r_lrange_it 3.837 r_lrange_other 3.725 r_scbond_it 3.677 r_scbond_other 3.674 r_rigid_bond_restr 2.949 r_mcangle_other 2.339 r_mcangle_it 2.324 r_mcbond_it 2.021 r_mcbond_other 1.993 r_angle_refined_deg 1.728 r_angle_other_deg 1.541 r_symmetry_xyhbond_nbd_refined 0.28 r_xyhbond_nbd_refined 0.273 r_symmetry_nbd_refined 0.256 r_nbd_refined 0.246 r_nbd_other 0.23 r_symmetry_nbd_other 0.18 r_symmetry_xyhbond_nbd_other 0.166 r_nbtor_refined 0.164 r_chiral_restr 0.095 r_symmetry_nbtor_other 0.081 r_metal_ion_refined 0.077 r_symmetry_metal_ion_refined 0.053 r_bond_refined_d 0.014 r_gen_planes_refined 0.01 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1438 Nucleic Acid Atoms Solvent Atoms 151 Heterogen Atoms 10
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction PHENIX phasing