X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.5291.151M Sodium acetate, 100mM HEPES, pH 7.5, 50mM Cadmium sulfate
Crystal Properties
Matthews coefficientSolvent content
2.3447.44

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 79.81α = 90
b = 79.81β = 90
c = 60.82γ = 90
Symmetry
Space GroupP 42 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray80CCDADSC QUANTUM 315r2018-05-16MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRF BEAMLINE BL17U10.97915SSRFBL17U1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.7539.999.980.04912.9220382
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.751.8130.104

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTNONE4JGG1.7539.920382105399.980.1240.12140.177414.497
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.2990.299-0.599
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.918
r_dihedral_angle_4_deg24.879
r_dihedral_angle_3_deg12.794
r_dihedral_angle_1_deg5.793
r_scangle_it4.132
r_scangle_other4.13
r_lrange_it3.837
r_lrange_other3.725
r_scbond_it3.677
r_scbond_other3.674
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.918
r_dihedral_angle_4_deg24.879
r_dihedral_angle_3_deg12.794
r_dihedral_angle_1_deg5.793
r_scangle_it4.132
r_scangle_other4.13
r_lrange_it3.837
r_lrange_other3.725
r_scbond_it3.677
r_scbond_other3.674
r_rigid_bond_restr2.949
r_mcangle_other2.339
r_mcangle_it2.324
r_mcbond_it2.021
r_mcbond_other1.993
r_angle_refined_deg1.728
r_angle_other_deg1.541
r_symmetry_xyhbond_nbd_refined0.28
r_xyhbond_nbd_refined0.273
r_symmetry_nbd_refined0.256
r_nbd_refined0.246
r_nbd_other0.23
r_symmetry_nbd_other0.18
r_symmetry_xyhbond_nbd_other0.166
r_nbtor_refined0.164
r_chiral_restr0.095
r_symmetry_nbtor_other0.081
r_metal_ion_refined0.077
r_symmetry_metal_ion_refined0.053
r_bond_refined_d0.014
r_gen_planes_refined0.01
r_gen_planes_other0.002
r_bond_other_d0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1438
Nucleic Acid Atoms
Solvent Atoms151
Heterogen Atoms10

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
PHENIXphasing