7BF2

Ca2+-Calmodulin in complex with human muscle form creatine kinase peptide in extended 1:2 binding mode


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP4.529325% PEG 1500, 0.1 M SPG buffer pH 4-5. CaM-CKBpeptide ratios of 1:4
Crystal Properties
Matthews coefficientSolvent content
1.7730.53

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 105.695α = 90
b = 24.53β = 104.838
c = 60.349γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS3 6M2018-03-05MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID30B0.97625ESRFID30B

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.4334.34697.130.051340.99914.672754223.52
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.431.48191.071.5060.5150.96

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE2l7l1.4334.34627541133497.4590.2020.20060.228135.196
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.079-0.1550.142-0.999
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg29.679
r_dihedral_angle_3_deg17.569
r_dihedral_angle_4_deg17.529
r_lrange_it7.795
r_lrange_other7.785
r_scangle_it6.673
r_scangle_other6.673
r_dihedral_angle_1_deg5.174
r_scbond_other4.422
r_scbond_it4.42
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg29.679
r_dihedral_angle_3_deg17.569
r_dihedral_angle_4_deg17.529
r_lrange_it7.795
r_lrange_other7.785
r_scangle_it6.673
r_scangle_other6.673
r_dihedral_angle_1_deg5.174
r_scbond_other4.422
r_scbond_it4.42
r_mcangle_other3.781
r_mcangle_it3.779
r_mcbond_it2.756
r_mcbond_other2.753
r_angle_refined_deg1.762
r_angle_other_deg0.702
r_nbd_other0.28
r_nbd_refined0.253
r_symmetry_nbd_refined0.239
r_symmetry_nbd_other0.211
r_xyhbond_nbd_refined0.208
r_nbtor_refined0.179
r_symmetry_xyhbond_nbd_refined0.149
r_metal_ion_refined0.108
r_symmetry_metal_ion_refined0.096
r_symmetry_nbtor_other0.095
r_chiral_restr0.09
r_symmetry_xyhbond_nbd_other0.05
r_bond_refined_d0.013
r_gen_planes_refined0.009
r_bond_other_d0.007
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1380
Nucleic Acid Atoms
Solvent Atoms87
Heterogen Atoms4

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
MOLREPphasing