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The Fk1 domain of FKBP51 in complex with (2R,5S,12R)-12-cyclohexyl-2-[2-(3,4-dimethoxyphenyl)ethyl]-15,15,16-trimethyl-3,19-dioxa-10,13,16-triazatricyclo[18.3.1.0^5,^10]tetracosa-1(24),20,22-triene-4,11,14,17-tetrone
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7AOU
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 293 28% PEG3350
0.1M HEPES pH 7.5
0.2M ammonium thiocyanate NH4 SCN
Crystal Properties Matthews coefficient Solvent content 2.23 44.77
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.46 α = 90 b = 50.066 β = 90 c = 58.781 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2020-10-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.0 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 38.11 98.2 0.122 0.16 0.101 0.988 4.8 4.2 24784
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.42 1.332 1.728 1.09 0.494 4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 7AOU 1.4 38.003 24745 1242 97.729 0.197 0.1941 0.1949 0.2434 0.2481 RANDOM 21.766
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.579 -0.419 -1.16
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.508 r_dihedral_angle_4_deg 18.134 r_dihedral_angle_3_deg 12.716 r_dihedral_angle_1_deg 8.872 r_lrange_it 5.391 r_lrange_other 5.249 r_scangle_it 4.873 r_scangle_other 4.87 r_mcangle_it 4.385 r_mcangle_other 4.383
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.508 r_dihedral_angle_4_deg 18.134 r_dihedral_angle_3_deg 12.716 r_dihedral_angle_1_deg 8.872 r_lrange_it 5.391 r_lrange_other 5.249 r_scangle_it 4.873 r_scangle_other 4.87 r_mcangle_it 4.385 r_mcangle_other 4.383 r_scbond_it 4.021 r_scbond_other 4.017 r_mcbond_it 3.745 r_mcbond_other 3.743 r_rigid_bond_restr 3.256 r_angle_refined_deg 1.946 r_angle_other_deg 1.683 r_chiral_restr_other 1.121 r_nbd_refined 0.204 r_symmetry_nbd_other 0.183 r_nbd_other 0.173 r_nbtor_refined 0.172 r_symmetry_xyhbond_nbd_refined 0.163 r_xyhbond_nbd_refined 0.131 r_symmetry_nbd_refined 0.103 r_chiral_restr 0.099 r_symmetry_nbtor_other 0.086 r_bond_refined_d 0.017 r_gen_planes_refined 0.015 r_bond_other_d 0.004 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 936 Nucleic Acid Atoms Solvent Atoms 111 Heterogen Atoms 49
Software Software Software Name Purpose REFMAC refinement REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing