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AFGH61B WILD-TYPE COPPER LOADED
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6H1Z
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 Sample preincubated with 2 mM copper(II) acetate.
Reservoir consisting of 20 mM MgCl2, 0.1 M HEPES pH 7.5, 22% polyacrylic acid 5100 sodium salt.
Crystal Properties Matthews coefficient Solvent content 2.29 46.34
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.3 α = 75.86 b = 49.11 β = 88.38 c = 53.96 γ = 76.31
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2014-05-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MAX II BEAMLINE I911-3 1.350 MAX II I911-3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.37 31.08 91.4 0.051 0.998 18.2 3.9 82114
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.37 1.39 84.2 0.287 0.863 3.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 6H1Z 1.37 27.65 71213 3737 83.43 0.1074 0.1049 0.1051 0.1555 0.1562 RANDOM 18.554
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.19 -1.15 1.43 0.07 -1.75 -1.33
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.391 r_sphericity_free 32.902 r_sphericity_bonded 17.367 r_dihedral_angle_4_deg 14.377 r_dihedral_angle_3_deg 12.051 r_dihedral_angle_1_deg 6.824 r_rigid_bond_restr 4.728 r_mcangle_it 2.418 r_mcbond_it 2.023 r_angle_refined_deg 1.992
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.391 r_sphericity_free 32.902 r_sphericity_bonded 17.367 r_dihedral_angle_4_deg 14.377 r_dihedral_angle_3_deg 12.051 r_dihedral_angle_1_deg 6.824 r_rigid_bond_restr 4.728 r_mcangle_it 2.418 r_mcbond_it 2.023 r_angle_refined_deg 1.992 r_mcbond_other 1.981 r_angle_other_deg 1.079 r_chiral_restr 0.117 r_bond_refined_d 0.029 r_gen_planes_refined 0.012 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3404 Nucleic Acid Atoms Solvent Atoms 849 Heterogen Atoms 20
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction MOSFLM data reduction pointless data scaling MOLREP phasing