Experiment: 6HAQ

X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	6H1Z

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP		293	Sample preincubated with 2 mM copper(II) acetate. Reservoir consisting of 20 mM MgCl2, 0.1 M HEPES pH 7.5, 22% polyacrylic acid 5100 sodium salt.

Crystal Properties
Matthews coefficient	Solvent content
2.29	46.34

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 44.3	α = 75.86
b = 49.11	β = 88.38
c = 53.96	γ = 76.31

Symmetry
Space Group	P 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	CCD	MARMOSAIC 225 mm CCD		2014-05-27	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	MAX II BEAMLINE I911-3	1.350	MAX II	I911-3

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Sym I (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.37	31.08	91.4	0.051	0.998	18.2	3.9		82114

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R-Sym I (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.37	1.39	84.2		0.287	0.863		3.2

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work	R-Free	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	6H1Z	1.37	27.65	71213	3737	83.43	0.1074	0.1049	0.1555	RANDOM	18.554

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.19	-1.15	1.43	0.07	-1.75	-1.33

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	39.391
r_sphericity_free	32.902
r_sphericity_bonded	17.367
r_dihedral_angle_4_deg	14.377
r_dihedral_angle_3_deg	12.051
r_dihedral_angle_1_deg	6.824
r_rigid_bond_restr	4.728
r_mcangle_it	2.418
r_mcbond_it	2.023
r_angle_refined_deg	1.992

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	39.391
r_sphericity_free	32.902
r_sphericity_bonded	17.367
r_dihedral_angle_4_deg	14.377
r_dihedral_angle_3_deg	12.051
r_dihedral_angle_1_deg	6.824
r_rigid_bond_restr	4.728
r_mcangle_it	2.418
r_mcbond_it	2.023
r_angle_refined_deg	1.992
r_mcbond_other	1.981
r_angle_other_deg	1.079
r_chiral_restr	0.117
r_bond_refined_d	0.029
r_gen_planes_refined	0.012
r_gen_planes_other	0.002
r_bond_other_d	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	3404
Nucleic Acid Atoms
Solvent Atoms	849
Heterogen Atoms	20

Software

Software
Software Name	Purpose
REFMAC	refinement
PDB_EXTRACT	data extraction
MOSFLM	data reduction
pointless	data scaling
MOLREP	phasing

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.