☰ Navigation Tabs
Crystal structure of InhA:01 TCR in complex with HLA-E bound to InhA (53-61)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5W1W 5W1W, 5EU6 experimental model PDB 5EU6 5W1W, 5EU6
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 293.15 0.1 M TRIS pH 8.5, 25 % (w/v) PEG 4000, 15 % Glycerol
Crystal Properties Matthews coefficient Solvent content 2.47 50.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 71.14 α = 90 b = 108.67 β = 90 c = 119.94 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2018-04-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.9795 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.26 59.97 99.73 0.069 0.028 0.999 14.3 6.8 44167
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.26 2.3 97.95 1.183 0.616 0.352 1.1 4.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5W1W, 5EU6 2.26 59.97 41917 2192 99.6 0.24511 0.24291 0.2488 0.28706 0.2954 RANDOM 61.858
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.57 -0.44 -3.13
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.819 r_dihedral_angle_3_deg 15.734 r_dihedral_angle_4_deg 14.477 r_dihedral_angle_1_deg 6.537 r_long_range_B_refined 4.151 r_long_range_B_other 4.148 r_mcangle_it 2.629 r_mcangle_other 2.629 r_scangle_other 1.992 r_mcbond_it 1.516
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.819 r_dihedral_angle_3_deg 15.734 r_dihedral_angle_4_deg 14.477 r_dihedral_angle_1_deg 6.537 r_long_range_B_refined 4.151 r_long_range_B_other 4.148 r_mcangle_it 2.629 r_mcangle_other 2.629 r_scangle_other 1.992 r_mcbond_it 1.516 r_mcbond_other 1.515 r_angle_refined_deg 1.195 r_scbond_it 1.148 r_scbond_other 1.148 r_angle_other_deg 1.056 r_chiral_restr 0.035 r_gen_planes_refined 0.003 r_bond_refined_d 0.002 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6481 Nucleic Acid Atoms Solvent Atoms 52 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement xia2 data reduction xia2 data scaling PHASER phasing