6YWI

Structure of Chloroflexus aggregans flavin based fluorescent protein (CagFbFP) Q148E variant


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP2950.1M glutamic acid, 0.1M alanine, 0.1M glycine, 0.1M lysine, 0.1M serine, 0.1M MES, 0.1M Imid, pH 6.5, 20%PEG500, 10% PEG20000
Crystal Properties
Matthews coefficientSolvent content
2.3146.73

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 53.55α = 90
b = 109.84β = 90
c = 38.951γ = 90
Symmetry
Space GroupP 21 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M-F2018-04-18MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID23-10.9720ESRFID23-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.1354.9299.10.0690.0750.0290.99712.36.386013
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.131.1598.50.6750.7410.30.8015.9

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT6rhf1.1348.1881699424998.850.17280.17240.1817RANDOM14.851
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.280.02-0.31
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg27.567
r_dihedral_angle_4_deg12.819
r_dihedral_angle_3_deg11.493
r_dihedral_angle_1_deg7.064
r_angle_other_deg1.443
r_angle_refined_deg1.422
r_chiral_restr0.063
r_bond_refined_d0.008
r_gen_planes_refined0.007
r_gen_planes_other0.001
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg27.567
r_dihedral_angle_4_deg12.819
r_dihedral_angle_3_deg11.493
r_dihedral_angle_1_deg7.064
r_angle_other_deg1.443
r_angle_refined_deg1.422
r_chiral_restr0.063
r_bond_refined_d0.008
r_gen_planes_refined0.007
r_gen_planes_other0.001
r_bond_other_d
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1628
Nucleic Acid Atoms
Solvent Atoms198
Heterogen Atoms98

Software

Software
Software NamePurpose
Aimlessdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
XDSdata reduction
MOLREPphasing