6YRX

Low-dose crystal structure of FAP at room temperature

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	6YRU

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP		281	PEG 4000, Na citrate, spermidine

Crystal Properties
Matthews coefficient	Solvent content
3.33	63.06

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 95.65	α = 90
b = 105.65	β = 90
c = 158.01	γ = 90

Symmetry
Space Group	I 2 2 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	298	PIXEL	DECTRIS PILATUS3 6M		2017-12-13	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	ESRF BEAMLINE ID30B	0.9677	ESRF	ID30B

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.87	88	98.1	0.109	0.124	0.996	7.58	4.278		65032			36.072

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.87	2	99.7		1.064	1.208	0.436	0.98	4.287

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	6YRU	1.87	47.181	64990	3225	97.984	0.156	0.1544	0.18	34.631

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
1.073			-1.282		0.209

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	35.451
r_dihedral_angle_4_deg	18.029
r_dihedral_angle_3_deg	14.732
r_lrange_it	8.237
r_lrange_other	8.163
r_dihedral_angle_1_deg	7.301
r_scangle_it	6.579
r_scangle_other	6.578
r_scbond_it	4.235
r_scbond_other	4.235
r_mcangle_it	3.587
r_mcangle_other	3.582
r_mcbond_it	2.635
r_mcbond_other	2.62
r_angle_refined_deg	1.698
r_angle_other_deg	1.407
r_nbd_refined	0.203
r_nbd_other	0.199
r_symmetry_nbd_other	0.183
r_xyhbond_nbd_refined	0.17
r_nbtor_refined	0.164
r_symmetry_nbd_refined	0.145
r_symmetry_xyhbond_nbd_other	0.138
r_symmetry_nbtor_other	0.083
r_symmetry_xyhbond_nbd_refined	0.083
r_chiral_restr	0.078
r_bond_refined_d	0.011
r_gen_planes_refined	0.011
r_bond_other_d	0.002
r_gen_planes_other	0.002

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	4216
Nucleic Acid Atoms
Solvent Atoms	340
Heterogen Atoms	93

Software

Software
Software Name	Purpose
REFMAC	refinement
XSCALE	data scaling
PDB_EXTRACT	data extraction
XDS	data reduction
MOLREP	phasing