6X6I

Crystal structure of acetyltransferase Eis from Mycobacterium tuberculosis in complex with inhibitor SGT543


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP2940.1 M Tris-HCl pH 8.5, 13% PEG 8000 and 0.4 M (NH4)2SO4; KAN (5 mM) and CoA (4 mM) in drop. Replace 0.4 M (NH4)2SO4; KAN (5 mM) and CoA (4 mM) with 0.5 mM inhibitor upon soaking.
Crystal Properties
Matthews coefficientSolvent content
3.9869.08

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 175.027α = 90
b = 175.027β = 90
c = 124.131γ = 120
Symmetry
Space GroupH 3 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER X 16M2018-07-11MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 22-ID1.00APS22-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.95098.70.10.9924.37.556009
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.91.930.960.83

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE6X101.90437.43555883276298.1330.1750.17410.199729.297
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.259-0.63-1.2594.085
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg26.147
r_dihedral_angle_4_deg16.691
r_dihedral_angle_3_deg13.562
r_dihedral_angle_1_deg6.663
r_lrange_it5.945
r_lrange_other5.639
r_scangle_it3.324
r_scangle_other3.324
r_mcangle_it2.571
r_mcangle_other2.571
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg26.147
r_dihedral_angle_4_deg16.691
r_dihedral_angle_3_deg13.562
r_dihedral_angle_1_deg6.663
r_lrange_it5.945
r_lrange_other5.639
r_scangle_it3.324
r_scangle_other3.324
r_mcangle_it2.571
r_mcangle_other2.571
r_scbond_it2.004
r_scbond_other2.004
r_mcbond_it1.57
r_mcbond_other1.569
r_angle_refined_deg1.283
r_angle_other_deg1.246
r_nbd_refined0.186
r_symmetry_nbd_other0.186
r_nbd_other0.17
r_nbtor_refined0.154
r_xyhbond_nbd_refined0.145
r_symmetry_xyhbond_nbd_refined0.137
r_symmetry_nbd_refined0.13
r_symmetry_nbtor_other0.082
r_chiral_restr0.058
r_gen_planes_refined0.005
r_bond_refined_d0.004
r_bond_other_d0.002
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3026
Nucleic Acid Atoms
Solvent Atoms392
Heterogen Atoms58

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling
PHASERphasing