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NanR dimer-DNA hetero-complex
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 24.3754 f_angle_d 0.4651 f_chiral_restr 0.0315 f_plane_restr 0.0026 f_bond_d 0.0019
Sample NanR-DNA hetero-complex
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK III Cryogen Name ETHANE Sample Vitrification Details blotting conditions: 3 sec blotting time and -3 blot force.
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 141663 Reported Resolution (Å) 3.9 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry C1
Map-Model Fitting and Refinement Id 1 Refinement Space REAL Refinement Protocol FLEXIBLE FIT Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K2 SUMMIT (4k x 4k) Electron Dose (electrons/Å**2) 60
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model TFS KRIOS Minimum Defocus (nm) 500 Maximum Defocus (nm) 2500 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2.7 Imaging Mode BRIGHT FIELD Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER Nominal Magnification 215000 Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION Gautomatch 0.53 IMAGE ACQUISITION EPU CTF CORRECTION Gctf 1.06 CTF CORRECTION RELION 3.0 MODEL FITTING PHENIX 1.18 MODEL FITTING ISOLDE 1.0b3 MODEL REFINEMENT PHENIX 1.18 INITIAL EULER ASSIGNMENT RELION 3.1_beta FINAL EULER ASSIGNMENT RELION 3.1_beta RECONSTRUCTION RELION 3.0
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION 695465