☰ Navigation Tabs
An open conformation of a Pentameic ligand-gated ion channel with additional N-terminal domain
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6FLI
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 291 0.3 M NH4-Formate, 0.1 M Tris 7.5,
30% (v/v) PEG-MME 500
Crystal Properties Matthews coefficient Solvent content 3.99 69.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 141.064 α = 90 b = 116.028 β = 109.17 c = 169.63 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 193 PIXEL DECTRIS PILATUS 6M 2016-07-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SOLEIL BEAMLINE PROXIMA 1 0.9786 SOLEIL PROXIMA 1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.83 48.61 99.3 0.999 7.6 3.8 49576
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.83 3.93 0.448
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 6FLI 3.83 25 34738 1876 73.33 0.2574 0.2556 0.2561 0.2914 0.2927 RANDOM 145.969
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.81 -0.44 4.66 -0.43
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.313 r_dihedral_angle_3_deg 19.221 r_dihedral_angle_4_deg 12.985 r_dihedral_angle_1_deg 7.463 r_angle_refined_deg 1.983 r_angle_other_deg 1.169 r_chiral_restr 0.134 r_bond_refined_d 0.015 r_gen_planes_refined 0.008 r_bond_other_d 0.002
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.313 r_dihedral_angle_3_deg 19.221 r_dihedral_angle_4_deg 12.985 r_dihedral_angle_1_deg 7.463 r_angle_refined_deg 1.983 r_angle_other_deg 1.169 r_chiral_restr 0.134 r_bond_refined_d 0.015 r_gen_planes_refined 0.008 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 23051 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 142
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing