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Complex of ch28/11 Fab and SSEA-4 (tetragonal form)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1A7N 1A7N, 3IU4 experimental model PDB 3IU4 1A7N, 3IU4
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.6 291 PEG 4000, sodium acetate, ammonium sulfate
Crystal Properties Matthews coefficient Solvent content 3 58.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 67.795 α = 90 b = 67.795 β = 90 c = 234.04 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2018-04-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX2 0.954 Australian Synchrotron MX2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.52 50 99.9 0.1 15.8 13.3 84916
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.6 0.48
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1A7N, 3IU4 1.52 50 84916 2000 99.82 0.1729 0.1723 0.1831 0.1979 0.2118 RANDOM 25.4528
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.3 0.3 -0.6
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.863 r_dihedral_angle_4_deg 25.363 r_dihedral_angle_3_deg 11.602 r_dihedral_angle_1_deg 6.522 r_angle_other_deg 3.789 r_mcangle_it 2.743 r_angle_refined_deg 1.894 r_mcbond_it 1.861 r_mcbond_other 1.854 r_chiral_restr 0.113
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.863 r_dihedral_angle_4_deg 25.363 r_dihedral_angle_3_deg 11.602 r_dihedral_angle_1_deg 6.522 r_angle_other_deg 3.789 r_mcangle_it 2.743 r_angle_refined_deg 1.894 r_mcbond_it 1.861 r_mcbond_other 1.854 r_chiral_restr 0.113 r_gen_planes_other 0.019 r_bond_refined_d 0.018 r_gen_planes_refined 0.009 r_bond_other_d
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3192 Nucleic Acid Atoms Solvent Atoms 595 Heterogen Atoms 119
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction XDS data reduction XSCALE data scaling PHENIX phasing