6TO3

GSTF1 from Alopecurus myosuroides - covalently modified


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP5.6298Na/K tartrate and ammonium sulfate
Crystal Properties
Matthews coefficientSolvent content
1.8332.62

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 104.76α = 90
b = 104.76β = 90
c = 79.37γ = 120
Symmetry
Space GroupP 63 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDAPEX II CCD2011-06-01MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODEBRUKER AXS MICROSTAR1.54

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.79859.8081000.08315.350.16748
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.7982.861000.47

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONFOURIER SYNTHESISFREE R-VALUE2.79859.808667431699.0350.2110.20810.280838.904
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.045-0.023-0.0450.146
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.225
r_dihedral_angle_4_deg19.41
r_dihedral_angle_3_deg17.921
r_lrange_other7.729
r_lrange_it7.726
r_dihedral_angle_1_deg6.716
r_scangle_it5.348
r_scangle_other5.346
r_mcangle_it4.737
r_mcangle_other4.735
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.225
r_dihedral_angle_4_deg19.41
r_dihedral_angle_3_deg17.921
r_lrange_other7.729
r_lrange_it7.726
r_dihedral_angle_1_deg6.716
r_scangle_it5.348
r_scangle_other5.346
r_mcangle_it4.737
r_mcangle_other4.735
r_scbond_it3.466
r_scbond_other3.464
r_mcbond_it3.154
r_mcbond_other3.124
r_angle_other_deg2.383
r_angle_refined_deg1.721
r_symmetry_nbd_refined0.376
r_symmetry_xyhbond_nbd_refined0.231
r_symmetry_nbd_other0.23
r_nbd_refined0.226
r_nbd_other0.22
r_nbtor_refined0.181
r_xyhbond_nbd_refined0.176
r_symmetry_nbtor_other0.093
r_chiral_restr0.071
r_bond_other_d0.035
r_bond_refined_d0.009
r_gen_planes_other0.009
r_gen_planes_refined0.007
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1470
Nucleic Acid Atoms
Solvent Atoms8
Heterogen Atoms18

Software

Software
Software NamePurpose
REFMACrefinement
SAINTdata reduction
SADABSdata scaling
PHASERphasing