6TK8

GSTF1 F122T variant from Alopecurus myosuroides

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	6TJS

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP		293	Morpheus screen

Crystal Properties
Matthews coefficient	Solvent content
3.32	62.91

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 112.59	α = 90
b = 112.59	β = 90
c = 104.3	γ = 90

Symmetry
Space Group	I 41 2 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS3 S 6M		2018-06-01	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	DIAMOND BEAMLINE I04-1	0.920	Diamond	I04-1

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.78	43.6	99.8	0.04	10.7	1.8		8791

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.78	2.93	99.1		0.456

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	6TJS	2.78	43.6	8717	478	99.725	0.184	0.1802	0.2505	78.244

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-3.003			-3.003		6.005

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	33.086
r_dihedral_angle_4_deg	21.996
r_dihedral_angle_3_deg	19.486
r_lrange_other	14.498
r_lrange_it	14.497
r_scangle_it	11.93
r_scangle_other	11.925
r_mcangle_it	10.815
r_mcangle_other	10.81
r_scbond_other	7.981
r_scbond_it	7.978
r_dihedral_angle_1_deg	7.81
r_mcbond_other	7.508
r_mcbond_it	7.507
r_angle_other_deg	2.402
r_angle_refined_deg	1.679
r_nbd_other	0.257
r_symmetry_nbd_other	0.233
r_nbd_refined	0.223
r_nbtor_refined	0.18
r_xyhbond_nbd_refined	0.143
r_symmetry_nbd_refined	0.128
r_symmetry_nbtor_other	0.096
r_chiral_restr	0.068
r_bond_other_d	0.035
r_gen_planes_other	0.009
r_bond_refined_d	0.008
r_gen_planes_refined	0.007

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	1649
Nucleic Acid Atoms
Solvent Atoms	5
Heterogen Atoms	20

Software

Software
Software Name	Purpose
REFMAC	refinement
DIALS	data reduction
DIALS	data scaling
AMoRE	phasing