6TJS

GSTF1 from Alopecurus myosuroides

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	1AXD

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP	5.6	298	sodium citrate pH 5.6, Na/K tartrate 1.5-2.0 M ammonium sulfate

Crystal Properties
Matthews coefficient	Solvent content
2.45	49.71

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 103.695	α = 90
b = 103.695	β = 90
c = 78.769	γ = 120

Symmetry
Space Group	P 63 2 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS3 6M		2018-06-01	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	DIAMOND BEAMLINE I04-1	0.916	Diamond	I04-1

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rpim I (All)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.53	52	100	0.034	0.014	27.3	12.6		38156

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.53	1.6			0.079

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	1AXD	1.53	51.847	38090	1886	99.851	0.193	0.1928	0.2058	30.173

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.238	0.119		0.238		-0.773

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	26.613
r_dihedral_angle_4_deg	15.103
r_dihedral_angle_3_deg	13.321
r_lrange_other	7.514
r_lrange_it	7.51
r_scangle_other	6.13
r_scangle_it	6.129
r_dihedral_angle_1_deg	6.068
r_mcangle_it	4.339
r_mcangle_other	4.337
r_scbond_it	4.181
r_scbond_other	4.171
r_mcbond_it	3.007
r_mcbond_other	3.006
r_angle_other_deg	2.304
r_angle_refined_deg	1.818
r_nbd_refined	0.234
r_symmetry_nbd_other	0.222
r_nbd_other	0.191
r_nbtor_refined	0.189
r_symmetry_nbd_refined	0.188
r_xyhbond_nbd_refined	0.163
r_chiral_restr	0.102
r_symmetry_nbtor_other	0.075
r_symmetry_xyhbond_nbd_refined	0.072
r_bond_other_d	0.034
r_gen_planes_other	0.019
r_bond_refined_d	0.013
r_gen_planes_refined	0.012

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	1522
Nucleic Acid Atoms
Solvent Atoms	112
Heterogen Atoms

Software

Software
Software Name	Purpose
REFMAC	refinement
DIALS	data reduction
DIALS	data scaling
PHASER	phasing