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Trypanothione Reductase from Leishmania infantum in complex with 9a
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2JK6
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 291 2.2M ammonium sulphate, 0.1M Tris-HCl pH 8-8.5
Crystal Properties Matthews coefficient Solvent content 4.88 74.78
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 103.43 α = 90 b = 103.43 β = 90 c = 192.79 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2017-10-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALBA BEAMLINE XALOC 0.979260 ALBA XALOC
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3 68.38 98.9 0.172 0.192 0.081 0.965 5.6 5.3 21445
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3 3.18 99.5 0.665 0.733 0.298 0.831 5.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2JK6 3 68.38 20315 1051 98.49 0.217 0.2149 0.2181 0.2571 0.2533 RANDOM 65.543
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.85 2.85 -5.7
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.274 r_dihedral_angle_4_deg 18.459 r_dihedral_angle_3_deg 16.251 r_dihedral_angle_1_deg 13.313 r_angle_refined_deg 1.511 r_angle_other_deg 1.251 r_chiral_restr 0.063 r_bond_refined_d 0.007 r_gen_planes_refined 0.005 r_gen_planes_other 0.005
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.274 r_dihedral_angle_4_deg 18.459 r_dihedral_angle_3_deg 16.251 r_dihedral_angle_1_deg 13.313 r_angle_refined_deg 1.511 r_angle_other_deg 1.251 r_chiral_restr 0.063 r_bond_refined_d 0.007 r_gen_planes_refined 0.005 r_gen_planes_other 0.005 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3701 Nucleic Acid Atoms Solvent Atoms 130 Heterogen Atoms 138
Software Software Software Name Purpose REFMAC refinement Aimless data scaling PDB_EXTRACT data extraction MOSFLM data reduction MOLREP phasing