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Trypanothione Reductase from Leismania infantum in complex with 4a
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2JK6
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 291 2.2M ammonium sulphate, 0.1M Tris-HCl pH 8-8.5
Crystal Properties Matthews coefficient Solvent content 4.87 74.74
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 103.5 α = 90 b = 103.5 β = 90 c = 192.22 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2016-12-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALBA BEAMLINE XALOC 0.979260 ALBA XALOC
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 73.29 99.5 0.097 0.106 0.042 0.996 9.6 5.9 36767
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.6 99.3 0.582 0.645 0.269 0.904 5.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2JK6 2.5 73.19 34863 1805 99.24 0.2209 0.2195 0.2213 0.2474 0.2473 RANDOM 47.952
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.14 2.14 -4.28
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.821 r_dihedral_angle_3_deg 16.034 r_dihedral_angle_4_deg 14.905 r_dihedral_angle_1_deg 6.572 r_angle_refined_deg 1.235 r_angle_other_deg 1.23 r_chiral_restr 0.059 r_bond_refined_d 0.003 r_bond_other_d 0.003 r_gen_planes_refined 0.003
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.821 r_dihedral_angle_3_deg 16.034 r_dihedral_angle_4_deg 14.905 r_dihedral_angle_1_deg 6.572 r_angle_refined_deg 1.235 r_angle_other_deg 1.23 r_chiral_restr 0.059 r_bond_refined_d 0.003 r_bond_other_d 0.003 r_gen_planes_refined 0.003 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3701 Nucleic Acid Atoms Solvent Atoms 260 Heterogen Atoms 161
Software Software Software Name Purpose REFMAC refinement Aimless data scaling PDB_EXTRACT data extraction iMOSFLM data reduction MOLREP phasing