6SWZ

Structure of the C-terminal domain of C. glutamicum mycoloyltransferase A


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION2931.2 to 1.4 M NaCl, 0.1M Na Acetate, pH 4.6
Crystal Properties
Matthews coefficientSolvent content
2.0456

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 48α = 90
b = 57.67β = 90
c = 83.4γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER X 9M2016-09-09MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSOLEIL BEAMLINE PROXIMA 20.98011SOLEILPROXIMA 2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Rrim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.99541.73599.40.1150.9911.467.2616219
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Rrim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
122.121.250.641.54

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.99541.7351621981199.3630.2010.19810.258436.766
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-2.4713.106-0.635
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.207
r_dihedral_angle_4_deg19.382
r_dihedral_angle_3_deg12.404
r_dihedral_angle_1_deg7.634
r_lrange_it6.454
r_lrange_other6.44
r_scangle_it4.528
r_scangle_other4.526
r_mcangle_it3.958
r_mcangle_other3.957
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.207
r_dihedral_angle_4_deg19.382
r_dihedral_angle_3_deg12.404
r_dihedral_angle_1_deg7.634
r_lrange_it6.454
r_lrange_other6.44
r_scangle_it4.528
r_scangle_other4.526
r_mcangle_it3.958
r_mcangle_other3.957
r_scbond_it3.131
r_scbond_other3.129
r_mcbond_it2.743
r_mcbond_other2.733
r_angle_other_deg2.404
r_angle_refined_deg1.49
r_symmetry_nbd_refined0.255
r_nbd_other0.224
r_symmetry_nbd_other0.211
r_nbd_refined0.184
r_nbtor_refined0.181
r_xyhbond_nbd_refined0.156
r_symmetry_xyhbond_nbd_refined0.123
r_symmetry_nbtor_other0.073
r_chiral_restr0.064
r_bond_other_d0.037
r_bond_refined_d0.009
r_gen_planes_other0.009
r_gen_planes_refined0.007
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1674
Nucleic Acid Atoms
Solvent Atoms77
Heterogen Atoms12

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XDSdata scaling
PHASERphasing