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Structure of the Fluorescent Protein AausFP2 from Aequorea cf. australis at pH 7.6
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4HE4 phiYFPv (Phialidium, PDB:4HE4)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.6 293 24% PEG 3350, 0.2 M sodium chloride, 0.1M HEPES pH 7.6
Crystal Properties Matthews coefficient Solvent content 2 38.65
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 54.41 α = 90 b = 75.13 β = 90 c = 100.41 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M CRL Transfocator, Elliptical mirror 2018-06-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID30B 0.976 ESRF ID30B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.06 44.11 99.8 0.1 0.998 12.79 6 13079 38
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.06 2.11 99.7 0.683 2.16 5.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT phiYFPv (Phialidium, PDB:4HE4) 2.06 44.11 12447 632 99.77 0.1683 0.1665 0.2018 0.1886 RANDOM 34.468
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.53 1.11 2.42
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.337 r_dihedral_angle_4_deg 20.307 r_dihedral_angle_3_deg 14.845 r_dihedral_angle_1_deg 8.015 r_angle_refined_deg 1.69 r_angle_other_deg 1.304 r_chiral_restr 0.061 r_bond_refined_d 0.009 r_gen_planes_refined 0.008 r_bond_other_d 0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.337 r_dihedral_angle_4_deg 20.307 r_dihedral_angle_3_deg 14.845 r_dihedral_angle_1_deg 8.015 r_angle_refined_deg 1.69 r_angle_other_deg 1.304 r_chiral_restr 0.061 r_bond_refined_d 0.009 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1737 Nucleic Acid Atoms Solvent Atoms 148 Heterogen Atoms 20
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing PDB_EXTRACT data extraction