Find PDB structures and Computed Structure Models (CSM) by combining queries from tools in this suite: Attribute Search, Sequence Similarity, Sequence Motif, 3D Similarity, and 3D Motif with 'AND' logic.
Rigid body fitting of flagellin FlaB, and flagellar coiling proteins, FcpA and FcpB, into a 10 Angstrom structure of the asymmetric flagellar filament purified from Leptospira biflexa Patoc WT cells resolved via subtomogram averaging
Flagellar filament purified from the periplasm of the Spirochete bacterium, Leptospira biflexa
Specimen Preparation
Sample Aggregation State
FILAMENT
Vitrification Instrument
FEI VITROBOT MARK III
Cryogen Name
ETHANE
Sample Vitrification Details
2 minute incubation time; blot time of 6-7.5 seconds; and blot offset of -2 mm
3D Reconstruction
Reconstruction Method
SUBTOMOGRAM AVERAGING
Number of Particles
10581
Reported Resolution (Å)
9.83
Resolution Method
FSC 0.143 CUT-OFF
Other Details
emClarity: The two half-dataset volumes were combined with a B-170 factor of 0, and the Gold standard FSC at 0.143 was calculated to be 9.83 A with an ...
emClarity: The two half-dataset volumes were combined with a B-170 factor of 0, and the Gold standard FSC at 0.143 was calculated to be 9.83 A with anisotropic resolutions ranging from 8.89-16.17 Angstrom.
Refinement Type
Symmetry Type
POINT
Point Symmetry
C1
Map-Model Fitting and Refinement
Id
1 (5WJT, 6NQW, 6NQZ)
Refinement Space
RECIPROCAL
Refinement Protocol
RIGID BODY FIT
Refinement Target
Correlation coefficient
Overall B Value
Fitting Procedure
Details
Eliminate minor clashes between FlaB1, FcpA, and FcpB