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LCP-embedded Proteinase K treated with lipase
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2ID8 PDB entry 2ID8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 67.561 α = 90 b = 67.561 β = 90 c = 106.802 γ = 90
Symmetry Space Group P 43 21 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B ELECTRON CRYSTALLOGRAPHY MOLECULAR REPLACEMENT FREE R-VALUE PDB entry 2ID8 2 16.58 16351 1632 94.6 0.2442 0.2634 0.2824 0.3032
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
Software Software Software Name Purpose PHENIX refinement PHASER phasing iMOSFLM data reduction SCALA data scaling
Specimen Preparation Sample Aggregation State 3D ARRAY Vitrification Instrument Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method CRYSTALLOGRAPHY Number of Particles Reported Resolution (Å) 2 Resolution Method DIFFRACTION PATTERN/LAYERLINES Other Details Refinement Type Symmetry Type 3D CRYSTAL Space Group Name Length a 67.56 Length b 67.56 Length c 67.56 Angle Alpha 90 Angle Beta 90 Angle Gamma 90
Map-Model Fitting and Refinement Id 1 Refinement Space Refinement Protocol OTHER Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type TVIPS TEMCAM-F416 (4k x 4k) Electron Dose (electrons/Å**2) 0.04
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TECNAI F20 Minimum Defocus (nm) Maximum Defocus (nm) Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode DIFFRACTION Specimen Holder Model Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 200 Imaging Details
EM Software Task Software Package Version MOLECULAR REPLACEMENT PHENIX 1.13-2998 CRYSTALLOGRAPHY MERGING CCP4 package 7.0.058 RECONSTRUCTION PHENIX 1.13-2998
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details NONE