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Crystal structure of Mycobacterium smegmatis MutT1 in complex with GMPPCP (GDP)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5GG5
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 4.6 298 0.2 M ammonium acetate, 0.1 M sodium acetate trihydrate, 30% w/v PEG 4000
Crystal Properties Matthews coefficient Solvent content 2.1 41.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 192.65 α = 90 b = 37.08 β = 90 c = 44.8 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2015-05-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 0.95372 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 36.74 100 0.087 0.096 0.041 0.997 9.5 5.4 52698
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Rrim I (All) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.58 100 0.61 0.61 0.676 0.288 1.2 5.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5GG5 1.5 32.82 49683 2667 99.43 0.1901 0.1884 0.2226 0.2405 RANDOM 18.106
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.72 -0.03 0.75
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 25.815 r_dihedral_angle_4_deg 17.639 r_dihedral_angle_3_deg 12.726 r_dihedral_angle_1_deg 6.274 r_angle_other_deg 2.367 r_angle_refined_deg 1.983 r_chiral_restr 0.11 r_bond_other_d 0.034 r_bond_refined_d 0.017 r_gen_planes_other 0.016
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 25.815 r_dihedral_angle_4_deg 17.639 r_dihedral_angle_3_deg 12.726 r_dihedral_angle_1_deg 6.274 r_angle_other_deg 2.367 r_angle_refined_deg 1.983 r_chiral_restr 0.11 r_bond_other_d 0.034 r_bond_refined_d 0.017 r_gen_planes_other 0.016 r_gen_planes_refined 0.011
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2248 Nucleic Acid Atoms Solvent Atoms 383 Heterogen Atoms 46
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction