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Crystal structure of a mouse ependymin related protein
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 298 0.1 M Sodium citrate tribasic dihydrate pH 5.6,
0.5 M Ammonium sulfate,
1.0 M Lithium sulfate monohydrate
Crystal Properties Matthews coefficient Solvent content 2.49 50.68
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 56.966 α = 90 b = 59.671 β = 101.29 c = 137.336 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2018-06-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 5C (4A) 1.00065 PAL/PLS 5C (4A)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 50 99.9 44.4 7.2 35643
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.4 2.44
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.4 50 33843 1787 99.62 0.18766 0.18481 0.1919 0.24007 0.2393 RANDOM 53.975
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.29 1.77 -0.23 0.75
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.235 r_dihedral_angle_4_deg 22.199 r_dihedral_angle_3_deg 18.046 r_long_range_B_other 11.69 r_long_range_B_refined 11.686 r_scangle_other 8.45 r_dihedral_angle_1_deg 7.768 r_mcangle_it 6.857 r_mcangle_other 6.857 r_scbond_it 5.411
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.235 r_dihedral_angle_4_deg 22.199 r_dihedral_angle_3_deg 18.046 r_long_range_B_other 11.69 r_long_range_B_refined 11.686 r_scangle_other 8.45 r_dihedral_angle_1_deg 7.768 r_mcangle_it 6.857 r_mcangle_other 6.857 r_scbond_it 5.411 r_scbond_other 5.411 r_mcbond_it 4.511 r_mcbond_other 4.511 r_angle_refined_deg 1.838 r_angle_other_deg 0.874 r_chiral_restr 0.107 r_bond_refined_d 0.016 r_gen_planes_refined 0.008 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5995 Nucleic Acid Atoms Solvent Atoms 109 Heterogen Atoms 94
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling PHASER phasing