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Crystal structure of aminotransferase Aro9 from C. Albicans with ligands
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 0.06 M MgCl2, 0.06 M CaCl2, 0.1 M Tris (base): BICINE pH 8.5, 12.5% v/v MPD, 12.5% PEG 1000, 12.5% w/v PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.24 45.14
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.57 α = 90 b = 88.54 β = 90 c = 160.96 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2017-05-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.2 0.89429 BESSY 14.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 50 94 0.178 0.992 9.22 4.7 31584
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.76 95.7 0.904 0.717 2.05 4.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.6 46.53 30634 948 93.98 0.20159 0.19917 0.204 0.27971 0.2792 RANDOM 46.982
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.69 0.11 -1.81
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.097 r_dihedral_angle_3_deg 17.104 r_dihedral_angle_4_deg 16.407 r_long_range_B_refined 7.767 r_long_range_B_other 7.763 r_dihedral_angle_1_deg 7.503 r_scangle_other 5.722 r_mcangle_it 5.398 r_mcangle_other 5.397 r_scbond_it 3.729
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.097 r_dihedral_angle_3_deg 17.104 r_dihedral_angle_4_deg 16.407 r_long_range_B_refined 7.767 r_long_range_B_other 7.763 r_dihedral_angle_1_deg 7.503 r_scangle_other 5.722 r_mcangle_it 5.398 r_mcangle_other 5.397 r_scbond_it 3.729 r_scbond_other 3.729 r_mcbond_other 3.613 r_mcbond_it 3.612 r_angle_other_deg 2.305 r_angle_refined_deg 1.584 r_chiral_restr 0.069 r_bond_other_d 0.034 r_bond_refined_d 0.008 r_gen_planes_other 0.008 r_gen_planes_refined 0.007 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7530 Nucleic Acid Atoms Solvent Atoms 195 Heterogen Atoms 117
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling PHASER phasing