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Pentapeptide repeat family protein from Clostridium botulinum
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 0.1 M Bis-Tris pH 5.5, 25% PEG 3350
Crystal Properties Matthews coefficient Solvent content 5.8 78.79
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 107.751 α = 90 b = 108.475 β = 94.6 c = 112.89 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2016-04-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.9282 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 112.53 99.2 10.1 3.8 63384
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.8 2.87
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.8 112.53 60286 3079 99.03 0.1716 0.1699 0.1789 0.205 0.2072 RANDOM 59.071
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.26 1.42 -1.88 0.39
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.916 r_dihedral_angle_3_deg 19.691 r_dihedral_angle_4_deg 18.204 r_dihedral_angle_1_deg 6.856 r_mcangle_it 5.483 r_angle_other_deg 3.7 r_mcbond_it 3.622 r_mcbond_other 3.621 r_angle_refined_deg 1.357 r_chiral_restr 0.06
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.916 r_dihedral_angle_3_deg 19.691 r_dihedral_angle_4_deg 18.204 r_dihedral_angle_1_deg 6.856 r_mcangle_it 5.483 r_angle_other_deg 3.7 r_mcbond_it 3.622 r_mcbond_other 3.621 r_angle_refined_deg 1.357 r_chiral_restr 0.06 r_bond_refined_d 0.009 r_gen_planes_refined 0.006 r_gen_planes_other 0.006 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6941 Nucleic Acid Atoms Solvent Atoms 173 Heterogen Atoms 90
Software Software Software Name Purpose REFMAC refinement DIALS data reduction DIALS data scaling PHASER phasing