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human KIBRA C2 domain mutant C771A
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3K9D
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 291 0.1M Na HEPES, 0.8M Na dihydrogen phosphare, 0.8M K dihydrogen phosphate
5% glycerol cryoprotectant
Crystal Properties Matthews coefficient Solvent content 3.63 66.08
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 83.88 α = 90 b = 83.88 β = 90 c = 207.77 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU SATURN 944+ 2014-09-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.415 72.643 99.9 0.133 0.14 10.7 10.6 17355 41.2630665184
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.42 2.5 98.6 0.625 0.676 1.7 6.22
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 3K9D 2.4156309909 72.6422108694 1.35109357799 17336 859 99.7124122857 0.203125005734 0.200800854876 0.2009 0.247460327115 0.248 random selection 55.639236193
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 13.0763284794 f_angle_d 1.00020457761 f_chiral_restr 0.0515261468511 f_bond_d 0.0102883871041 f_plane_restr 0.00453971766486
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2040 Nucleic Acid Atoms Solvent Atoms 124 Heterogen Atoms 29
Software Software Software Name Purpose PHENIX refinement d*TREK data reduction d*TREK data scaling BALBES phasing