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Structure of the Monoclinic-2 (Monocl-2) Crystal Form of Human Apolipoprotein C1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1ROP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6 298 20% PEG
Crystal Properties Matthews coefficient Solvent content 1.64 25
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 27.889 α = 90 b = 46.472 β = 94.14 c = 34.088 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 298 AREA DETECTOR SDMS 1992-06-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-D 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 34 95.4 0.144 0.144 0.152 0.079 0.996 4.5 6.4 5912
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.1 97.3 0.656 0.656 0.842 0.417 0.567 1.1 3.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1ROP 2 34 5585 301 98.94 0.2411 0.23875 0.246 0.28747 0.2929 RANDOM 46.393
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.84 -1.41 -0.77 -1.84
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.68 r_dihedral_angle_3_deg 17.148 r_long_range_B_refined 16.082 r_long_range_B_other 16.08 r_dihedral_angle_4_deg 16.052 r_scangle_other 12.54 r_scbond_it 8.138 r_scbond_other 8.13 r_mcangle_other 7.868 r_mcangle_it 7.849
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.68 r_dihedral_angle_3_deg 17.148 r_long_range_B_refined 16.082 r_long_range_B_other 16.08 r_dihedral_angle_4_deg 16.052 r_scangle_other 12.54 r_scbond_it 8.138 r_scbond_other 8.13 r_mcangle_other 7.868 r_mcangle_it 7.849 r_mcbond_it 5.322 r_mcbond_other 5.06 r_dihedral_angle_1_deg 4.21 r_angle_refined_deg 1.157 r_angle_other_deg 0.625 r_chiral_restr 0.06 r_bond_refined_d 0.009 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 880 Nucleic Acid Atoms Solvent Atoms 24 Heterogen Atoms 16
Software Software Software Name Purpose REFMAC refinement DENZO data reduction Aimless data scaling PHASER phasing