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Crystal structure of a CLC-type fluoride/proton antiporter, V319G mutant
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6D0J
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.2 295 10 mM HEPES, pH 7.0
100 mM ADA, pH 6.2
100 mM NaF
100 mM K Formate
24% PEG 600
Crystal Properties Matthews coefficient Solvent content 4.77 74.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 118.106 α = 90 b = 124.843 β = 90 c = 135.482 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2017-10-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.2 1 ALS 5.0.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.12 49.67 99.9 0.082 1 12.2 17.6 36328 124.36
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.12 3.26 99.6 2.81 0.699 1.3 17.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 6D0J 3.12 49.67 1.35 35889 1778 98.91 0.2494 0.2483 0.2528 0.2701 0.2713 169.94
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 12.3027 f_angle_d 0.4516 f_chiral_restr 0.0387 f_plane_restr 0.0042 f_bond_d 0.0016
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7398 Nucleic Acid Atoms Solvent Atoms 11 Heterogen Atoms 205
Software Software Software Name Purpose PHENIX refinement DIALS data reduction Aimless data scaling PHASER phasing