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Crystal structure of TnmH
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3I53
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 298 0.2 M L-Proline, 0.1 M HEPES, pH 7.5, 10% w/v Polyethylene glycol 3,350
Crystal Properties Matthews coefficient Solvent content 2.61 52.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 110.86 α = 90 b = 110.86 β = 90 c = 113.31 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate 2017-09-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.74 56.66 99.9 10 5.5 21574
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.74 2.89
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3I53 2.74 56.66 20466 1083 99.8 0.20501 0.20246 0.207 0.25436 0.2557 RANDOM 59.021
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.8 0.4 0.8 -2.58
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.393 r_dihedral_angle_4_deg 19.488 r_dihedral_angle_3_deg 19.296 r_dihedral_angle_1_deg 7.035 r_long_range_B_refined 6.736 r_long_range_B_other 6.736 r_scangle_other 4.379 r_mcangle_it 4.117 r_mcangle_other 4.116 r_scbond_it 2.582
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.393 r_dihedral_angle_4_deg 19.488 r_dihedral_angle_3_deg 19.296 r_dihedral_angle_1_deg 7.035 r_long_range_B_refined 6.736 r_long_range_B_other 6.736 r_scangle_other 4.379 r_mcangle_it 4.117 r_mcangle_other 4.116 r_scbond_it 2.582 r_scbond_other 2.581 r_mcbond_it 2.53 r_mcbond_other 2.53 r_angle_refined_deg 1.385 r_angle_other_deg 0.986 r_chiral_restr 0.079 r_bond_refined_d 0.009 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5065 Nucleic Acid Atoms Solvent Atoms 51 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling MOLREP phasing