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Transcriptional repressor, CouR
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6C2S
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 282 60% Tacsimate (v/v) pH 7.0
Crystal Properties Matthews coefficient Solvent content 2.33 47.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 59.008 α = 90 b = 59.008 β = 90 c = 108.402 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2014-04-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-G 0.97857 APS 21-ID-G
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.073 59.01 98.3 0.066 0.07 0.024 0.999 21 8.5 22136
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.073 2.108 100 0.946 1.007 0.343 0.85 2.4 8.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 6C2S 2.07 59.01 21079 1057 98.33 0.27508 0.27184 0.2756 0.33441 0.3394 RANDOM 46.007
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.12 1.12 -2.23
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.322 r_dihedral_angle_3_deg 18.22 r_dihedral_angle_4_deg 15.935 r_long_range_B_refined 7.78 r_long_range_B_other 7.632 r_dihedral_angle_1_deg 6.592 r_mcangle_it 5.042 r_mcangle_other 5.04 r_scangle_other 4.365 r_mcbond_it 3.549
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.322 r_dihedral_angle_3_deg 18.22 r_dihedral_angle_4_deg 15.935 r_long_range_B_refined 7.78 r_long_range_B_other 7.632 r_dihedral_angle_1_deg 6.592 r_mcangle_it 5.042 r_mcangle_other 5.04 r_scangle_other 4.365 r_mcbond_it 3.549 r_mcbond_other 3.543 r_scbond_it 3.034 r_scbond_other 3.033 r_angle_refined_deg 1.707 r_angle_other_deg 1.046 r_chiral_restr 0.084 r_bond_refined_d 0.012 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2094 Nucleic Acid Atoms Solvent Atoms 316 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling PHASER phasing