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CRYSTAL STRUCTURE OF RIP1 KINASE BOUND TO INHIBITOR
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7 277 0.25 M ammonium iodide, 0.03 M glycyl-glycyl-glycine and polyethylene glycol (PEG) 3350
Crystal Properties Matthews coefficient Solvent content 2.01 38.82
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.262 α = 90 b = 95.094 β = 90 c = 134.444 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 277 CCD ADSC QUANTUM 315r 2015-05-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.3 0.97 ALS 5.0.3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 50 95.7 12.8 7.6 15973
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.66
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.6 44.83 15970 810 96.56 0.26138 0.259 0.2595 0.30665 0.301 RANDOM 44.744
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.34 0.03 -0.37
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.359 r_sphericity_free 20.79 r_dihedral_angle_3_deg 16.207 r_dihedral_angle_4_deg 14.804 r_dihedral_angle_1_deg 5.711 r_sphericity_bonded 1.472 r_angle_refined_deg 1.036 r_long_range_B_other 0.778 r_long_range_B_refined 0.777 r_angle_other_deg 0.748
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.359 r_sphericity_free 20.79 r_dihedral_angle_3_deg 16.207 r_dihedral_angle_4_deg 14.804 r_dihedral_angle_1_deg 5.711 r_sphericity_bonded 1.472 r_angle_refined_deg 1.036 r_long_range_B_other 0.778 r_long_range_B_refined 0.777 r_angle_other_deg 0.748 r_mcangle_it 0.631 r_mcangle_other 0.631 r_scangle_other 0.463 r_mcbond_it 0.458 r_mcbond_other 0.453 r_rigid_bond_restr 0.429 r_scbond_it 0.366 r_scbond_other 0.366 r_chiral_restr 0.062 r_bond_refined_d 0.005 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4117 Nucleic Acid Atoms Solvent Atoms 32 Heterogen Atoms 38
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing