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The crystal structure of fluoride channel Fluc Ec2 with Monobody S9
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5KBN
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 295 100 mM ADA-NaOH, 50 mM LiNO3, 31% PEG 600
Crystal Properties Matthews coefficient Solvent content 5.85 78.96
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 87.412 α = 90 b = 87.412 β = 90 c = 144.333 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 77 CCD ADSC QUANTUM 315r 2017-04-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.1 0.999 ALS 8.2.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.55 87.41 99.9 0.098 0.102 0.026 0.999 15.4 15.1 35318
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.55 2.66 100 1.509 1.562 0.4 0.956 15.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5kbn 2.55 84.34 33468 1742 99.67 0.223 0.2218 0.227 0.2464 0.2491 RANDOM 73.647
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.42 -3.42 6.84
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.373 r_dihedral_angle_3_deg 13.89 r_dihedral_angle_4_deg 9.381 r_dihedral_angle_1_deg 6.277 r_angle_refined_deg 1.594 r_angle_other_deg 0.947 r_chiral_restr 0.087 r_bond_refined_d 0.015 r_gen_planes_refined 0.007 r_bond_other_d 0.002
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.373 r_dihedral_angle_3_deg 13.89 r_dihedral_angle_4_deg 9.381 r_dihedral_angle_1_deg 6.277 r_angle_refined_deg 1.594 r_angle_other_deg 0.947 r_chiral_restr 0.087 r_bond_refined_d 0.015 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3330 Nucleic Acid Atoms Solvent Atoms 121 Heterogen Atoms 71
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing PDB_EXTRACT data extraction