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Copper transporter protein
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3CJK
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 286 20%PEG8000,0.1M MES pH6.0,0.2M Ca(oAc)2
Crystal Properties Matthews coefficient Solvent content 2.65 53.64
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.114 α = 90 b = 87.582 β = 90 c = 77.301 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX-225 2017-12-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NFPSS BEAMLINE BL19U1 0.97776 NFPSS BL19U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 50 95.9 0.083 10.5 3.4 9508
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.18 0.378
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3CJK 2.1 43.79 8619 469 96.04 0.17625 0.17437 0.1816 0.21141 0.2092 RANDOM 37.109
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.86 2.93 -2.07
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_4_deg 37.802 r_dihedral_angle_2_deg 36.65 r_dihedral_angle_3_deg 14.944 r_long_range_B_refined 7.647 r_long_range_B_other 7.471 r_dihedral_angle_1_deg 5.731 r_scangle_other 5.388 r_scbond_it 3.427 r_scbond_other 3.426 r_mcangle_it 3.355
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_4_deg 37.802 r_dihedral_angle_2_deg 36.65 r_dihedral_angle_3_deg 14.944 r_long_range_B_refined 7.647 r_long_range_B_other 7.471 r_dihedral_angle_1_deg 5.731 r_scangle_other 5.388 r_scbond_it 3.427 r_scbond_other 3.426 r_mcangle_it 3.355 r_mcangle_other 3.354 r_mcbond_it 2.097 r_mcbond_other 2.067 r_angle_refined_deg 1.404 r_angle_other_deg 0.877 r_chiral_restr 0.071 r_bond_refined_d 0.01 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1017 Nucleic Acid Atoms Solvent Atoms 82 Heterogen Atoms 7
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling PHASER phasing