☰ Navigation Tabs
Structure of histone demethylase REF6 complexed with DNA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 291 PEG
Crystal Properties Matthews coefficient Solvent content 3.74 67.13
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 96.087 α = 90 b = 96.087 β = 90 c = 73.905 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2018-03-21 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL19U1 0.9793 SSRF BL19U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 50 99.7 0.055 39.5 9.1 11190
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.7 2.75 0.485
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.7 50.01 10516 596 99.46 0.223 0.22114 0.2245 0.25663 0.2584 RANDOM 48.77
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 0.01 0.01 -0.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.666 r_dihedral_angle_4_deg 21.486 r_dihedral_angle_3_deg 14.969 r_dihedral_angle_1_deg 6.123 r_long_range_B_refined 5.761 r_long_range_B_other 5.751 r_scangle_other 3.605 r_mcangle_it 3.418 r_mcangle_other 3.415 r_scbond_it 2.1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.666 r_dihedral_angle_4_deg 21.486 r_dihedral_angle_3_deg 14.969 r_dihedral_angle_1_deg 6.123 r_long_range_B_refined 5.761 r_long_range_B_other 5.751 r_scangle_other 3.605 r_mcangle_it 3.418 r_mcangle_other 3.415 r_scbond_it 2.1 r_scbond_other 2.099 r_mcbond_it 1.98 r_mcbond_other 1.976 r_angle_other_deg 1.179 r_angle_refined_deg 1.099 r_chiral_restr 0.064 r_bond_refined_d 0.006 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1001 Nucleic Acid Atoms 650 Solvent Atoms 79 Heterogen Atoms 16
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling HKL2Map phasing