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Human insulin in complex with serotonin and arginine
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1MSO
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 5 mM ZnAcetate, 35 mM NaCitrate, 1.1 M NaCl, 0.3M Tris pH 7.5, 40 mM serotonin, 100 mM arginine.
Crystal Properties Matthews coefficient Solvent content 2.3 46.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 158.64 α = 90 b = 158.64 β = 90 c = 76.1 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2014-12-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.9795 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 42.9 98.3 0.998 13.6 4.9 46018
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.07 97.7 0.758 2.6 4.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1MSO 2.02 42.89 46012 2266 98.29 0.24 0.2362 0.2436 0.3099 0.3118 RANDOM 42.855
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.58 -0.29 -0.58 1.9
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.876 r_dihedral_angle_3_deg 15.583 r_dihedral_angle_4_deg 11.262 r_dihedral_angle_1_deg 6.955 r_mcangle_it 5.177 r_angle_other_deg 3.935 r_mcbond_it 3.571 r_mcbond_other 3.569 r_angle_refined_deg 1.692 r_chiral_restr 0.103
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.876 r_dihedral_angle_3_deg 15.583 r_dihedral_angle_4_deg 11.262 r_dihedral_angle_1_deg 6.955 r_mcangle_it 5.177 r_angle_other_deg 3.935 r_mcbond_it 3.571 r_mcbond_other 3.569 r_angle_refined_deg 1.692 r_chiral_restr 0.103 r_bond_refined_d 0.014 r_gen_planes_other 0.009 r_gen_planes_refined 0.007 r_bond_other_d
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5665 Nucleic Acid Atoms Solvent Atoms 292 Heterogen Atoms 218
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction XDS data reduction Aimless data scaling MOLREP phasing