X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1MSO 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.52935 mM ZnAcetate, 35 mM NaCitrate, 1.1 M NaCl, 0.3M Tris pH 7.5, 40 mM serotonin, 100 mM arginine.
Crystal Properties
Matthews coefficientSolvent content
2.346.1

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 158.64α = 90
b = 158.64β = 90
c = 76.1γ = 120
Symmetry
Space GroupH 3

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2014-12-16MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I040.9795DiamondI04

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1242.998.30.99813.64.946018
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
122.0797.70.7582.64.6

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1MSO2.0242.8946012226698.290.240.23620.3099RANDOM42.855
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.58-0.29-0.581.9
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.876
r_dihedral_angle_3_deg15.583
r_dihedral_angle_4_deg11.262
r_dihedral_angle_1_deg6.955
r_mcangle_it5.177
r_angle_other_deg3.935
r_mcbond_it3.571
r_mcbond_other3.569
r_angle_refined_deg1.692
r_chiral_restr0.103
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.876
r_dihedral_angle_3_deg15.583
r_dihedral_angle_4_deg11.262
r_dihedral_angle_1_deg6.955
r_mcangle_it5.177
r_angle_other_deg3.935
r_mcbond_it3.571
r_mcbond_other3.569
r_angle_refined_deg1.692
r_chiral_restr0.103
r_bond_refined_d0.014
r_gen_planes_other0.009
r_gen_planes_refined0.007
r_bond_other_d
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5665
Nucleic Acid Atoms
Solvent Atoms292
Heterogen Atoms218

Software

Software
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction
XDSdata reduction
Aimlessdata scaling
MOLREPphasing