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Sulfur binding domain of ScoMcrA complexed with phosphorothioated DNA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 287 0.1M HEPES, pH 7.5, 0.8M ammonium phosphate monobasic, 0.8M potassium phosphate monobasic, 1% glycerol
Crystal Properties Matthews coefficient Solvent content 2.35 43.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 88.022 α = 90 b = 57.148 β = 101.35 c = 42.32 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2015-04-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL19U1 0.97853 SSRF BL19U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.69 50 97 11.4 3.8 22244
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.76
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.69 47.65 21142 1101 96.39 0.1901 0.1881 0.2013 0.2273 0.2398 RANDOM 31.482
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.84 -0.15 5.31 -2.23
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.845 r_dihedral_angle_3_deg 15.581 r_dihedral_angle_4_deg 14.088 r_dihedral_angle_1_deg 5.634 r_angle_refined_deg 1.888 r_angle_other_deg 1.241 r_chiral_restr 0.141 r_bond_refined_d 0.017 r_gen_planes_refined 0.012 r_bond_other_d 0.002
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.845 r_dihedral_angle_3_deg 15.581 r_dihedral_angle_4_deg 14.088 r_dihedral_angle_1_deg 5.634 r_angle_refined_deg 1.888 r_angle_other_deg 1.241 r_chiral_restr 0.141 r_bond_refined_d 0.017 r_gen_planes_refined 0.012 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1239 Nucleic Acid Atoms 287 Solvent Atoms 99 Heterogen Atoms 15
Software Software Software Name Purpose REFMAC refinement HKL-2000 data scaling PDB_EXTRACT data extraction