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 5ZMO | pdb_00005zmo

Sulfur binding domain of ScoMcrA complexed with phosphorothioated DNA

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ARRM_1e5zmoA1 A: alpha arraysX: HUP domain-likeH: HUP domainsT: HUP domainsF: RRM_1ECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF26340ScoMcrA-like, DNA sulfur-binding domain (DNA-SBD_ScoMcrA)ScoMcrA-like, DNA sulfur-binding domainThis entry represents the DNA sulfur-binding domain (SBD) found in the endonuclease ScoMcrA and related type IV restriction enzymes. This domain recognises the sulfur atom in phosphorothioated DNA (PT-DNA). The recognition of the PT-DNA by SBD is pho ...This entry represents the DNA sulfur-binding domain (SBD) found in the endonuclease ScoMcrA and related type IV restriction enzymes. This domain recognises the sulfur atom in phosphorothioated DNA (PT-DNA). The recognition of the PT-DNA by SBD is phosphorothioate-dependent and also DNA sequence-specific [1,2]. Residues involved in sulfur recognition are highly conserved across homologues. This domain adopts an alpha/beta fold consisting of a small three-stranded beta-sheet elaborated with alpha-helices [1,2].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
B, C
DNA (5'-D(P*CP*CP*GP*(GS)P*CP*CP*GP*G)-3')---
Uncharacterized protein McrA - -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR058813ScoMcrA-like, DNA sulfur-binding domainDomain
IPR058712ScoMcrA-like, SRA domainDomain
IPR058807ScoMcrA-like, N-terminal head domainDomain
IPR003615HNH nucleaseDomain
IPR002711HNH endonucleaseDomain