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Solution structure of LysM domain from a chitinase derived from Volvox carteri
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 194 uM [U-13C; U-15N] LysM, 20 mM [U-2H] sodium acetate 90% H2O/10% D2O 20 mM 5.0 1 atm 300 Bruker AVANCE III 500 2 3D HNCO 194 uM [U-13C; U-15N] LysM, 20 mM [U-2H] sodium acetate 90% H2O/10% D2O 20 mM 5.0 1 atm 300 Bruker AVANCE III 500 3 3D HNCACO 194 uM [U-13C; U-15N] LysM, 20 mM [U-2H] sodium acetate 90% H2O/10% D2O 20 mM 5.0 1 atm 300 Bruker AVANCE III 500 4 3D CBCA(CO)NH 194 uM [U-13C; U-15N] LysM, 20 mM [U-2H] sodium acetate 90% H2O/10% D2O 20 mM 5.0 1 atm 300 Bruker AVANCE III 500 5 3D HNCACB 194 uM [U-13C; U-15N] LysM, 20 mM [U-2H] sodium acetate 90% H2O/10% D2O 20 mM 5.0 1 atm 300 Bruker AVANCE III 500 12 3D 1H-15N NOESY 359 uM [U-13C; U-15N] LysM, 20 mM [U-13C; U-15N] sodium acetate 100% D2O 20 mM 5.0 1 atm 300 Bruker AVANCE III 500 11 3D 1H-15N TOCSY 359 uM [U-13C; U-15N] LysM, 20 mM [U-13C; U-15N] sodium acetate 100% D2O 20 mM 5.0 1 atm 300 Bruker AVANCE III 500 14 3D HBHACBCACONH 359 uM [U-13C; U-15N] LysM, 20 mM [U-13C; U-15N] sodium acetate 100% D2O 20 mM 5.0 1 atm 300 Bruker AVANCE III 500 10 2D 1H-13C HSQC 287 uM [U-13C; U-15N] LysM, 20 mM [U-2H] sodium acetate 100% D2O 20 mM 5.0 1 atm 300 Bruker AVANCE III 500 9 3D 1H-13C NOESY aliphatic 287 uM [U-13C; U-15N] LysM, 20 mM [U-2H] sodium acetate 100% D2O 20 mM 5.0 1 atm 300 Bruker AVANCE III 500 8 3D 1H-13C NOESY aromatic 287 uM [U-13C; U-15N] LysM, 20 mM [U-2H] sodium acetate 100% D2O 20 mM 5.0 1 atm 300 Bruker AVANCE III 500 7 3D HCCH-TOCSY 287 uM [U-13C; U-15N] LysM, 20 mM [U-2H] sodium acetate 100% D2O 20 mM 5.0 1 atm 300 Bruker AVANCE III 500 6 3D CCH-TOCSY 287 uM [U-13C; U-15N] LysM, 20 mM [U-2H] sodium acetate 100% D2O 20 mM 5.0 1 atm 300 Bruker AVANCE III 500 13 2D DQF-COSY 287 uM [U-13C; U-15N] LysM, 20 mM [U-2H] sodium acetate 100% D2O 20 mM 5.0 1 atm 300 Bruker AVANCE III 500
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE III 500
NMR Refinement Method Details Software simulated annealing CYANA
NMR Ensemble Information Conformer Selection Criteria target function Conformers Calculated Total Number 100 Conformers Submitted Total Number 20 Representative Model 1 (target function)
Computation: NMR Software # Classification Version Software Name Author 1 collection TopSpin Bruker Biospin 2 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 3 processing NMRDraw Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 4 peak picking Sparky Goddard 7 chemical shift assignment Sparky Goddard 6 structure calculation CYANA Guntert, Mumenthaler and Wuthrich 5 refinement CYANA Guntert, Mumenthaler and Wuthrich