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Crystal structure of flagellar hook associated protein-3 (HAP-3: Q5ZW61_LEGPH) from Legionella pneumophila
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.6 298 30% PEG 400, 0.1M Cadmium Chloride hydrate, 0.1M Sodium Acetate Trihydrate, pH 4.6
Crystal Properties Matthews coefficient Solvent content 2.91 57.79
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 107.687 α = 90 b = 107.687 β = 90 c = 90.248 γ = 90
Symmetry Space Group P 42 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2013-06-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A 0.987 NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.75 76.15 100 0.089 0.094 0.032 7.5 8.7 14351
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.75 2.8 100 0.938 0.994 0.325 0.743 9.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION AB INITIO PHASING THROUGHOUT 2.75 76.15 13543 733 99.62 0.2382 0.2354 0.2288 0.2884 0.2792 RANDOM 91.848
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.46 -1.46 2.92
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.49 r_dihedral_angle_3_deg 19.226 r_dihedral_angle_4_deg 19.013 r_dihedral_angle_1_deg 6.617 r_angle_refined_deg 1.606 r_angle_other_deg 0.786 r_chiral_restr 0.078 r_bond_refined_d 0.013 r_gen_planes_refined 0.005 r_bond_other_d 0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.49 r_dihedral_angle_3_deg 19.226 r_dihedral_angle_4_deg 19.013 r_dihedral_angle_1_deg 6.617 r_angle_refined_deg 1.606 r_angle_other_deg 0.786 r_chiral_restr 0.078 r_bond_refined_d 0.013 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2472 Nucleic Acid Atoms Solvent Atoms 2 Heterogen Atoms 1
Software Software Software Name Purpose REFMAC refinement SCALEPACK data scaling SHELXDE phasing PDB_EXTRACT data extraction HKL-2000 data reduction