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Member of s1p family of ribosomal proteins PF0399 DHH domain
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 277 4% (V/V) PEG 400
100 mM Sodium acetate/ Acetic acid pH 5.5
2000 mM Lithium sulfate
100 mM Magnesium sulfate
Crystal Properties Matthews coefficient Solvent content 5.31 76.84
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 132.5 α = 90 b = 132.5 β = 90 c = 212.245 γ = 120
Symmetry Space Group P 63 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2015-09-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NFPSS BEAMLINE BL19U1 0.9785 NFPSS BL19U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.18 50 97 15 33.6 56239
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.18 25.25 48383 2583 87.9 0.187 0.187 0.202 0.1741 RANDOM 34.78
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.02 0.02 0.02 -0.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.762 r_dihedral_angle_4_deg 16.225 r_dihedral_angle_3_deg 13.856 r_long_range_B_refined 5.176 r_long_range_B_other 5.175 r_dihedral_angle_1_deg 5.06 r_scangle_other 3.498 r_mcangle_it 2.237 r_mcangle_other 2.237 r_scbond_it 2.178
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.762 r_dihedral_angle_4_deg 16.225 r_dihedral_angle_3_deg 13.856 r_long_range_B_refined 5.176 r_long_range_B_other 5.175 r_dihedral_angle_1_deg 5.06 r_scangle_other 3.498 r_mcangle_it 2.237 r_mcangle_other 2.237 r_scbond_it 2.178 r_scbond_other 2.177 r_mcbond_it 1.381 r_mcbond_other 1.381 r_angle_refined_deg 1.13 r_angle_other_deg 0.732 r_chiral_restr 0.067 r_bond_refined_d 0.006 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3503 Nucleic Acid Atoms Solvent Atoms 159 Heterogen Atoms 25
Software Software Software Name Purpose REFMAC refinement Coot model building AutoSol phasing HKL-3000 data processing