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Peroxide Activation Regulated by Hydrogen Bonds within Artificial Cu Proteins - S112A
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2QCB PDB entry 2QCB
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4 298 0.1 M sodium acetate, 2.6 M sodium sulfate
Crystal Properties Matthews coefficient Solvent content 2.31 46.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.64 α = 90 b = 57.64 β = 90 c = 183.98 γ = 90
Symmetry Space Group I 41 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2016-12-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.2 1 ALS 8.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 55 100 13.3 9.6 25455
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.53
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 2QCB 1.5 55 23945 1278 99.17 0.15779 0.15618 0.166 0.18803 0.1985 RANDOM 19.241
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.64 -0.64 1.28
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.985 r_sphericity_free 22.88 r_dihedral_angle_4_deg 22.458 r_dihedral_angle_3_deg 12.023 r_sphericity_bonded 9.459 r_dihedral_angle_1_deg 7.546 r_long_range_B_refined 3.243 r_long_range_B_other 3.028 r_rigid_bond_restr 2.664 r_scangle_other 2.577
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.985 r_sphericity_free 22.88 r_dihedral_angle_4_deg 22.458 r_dihedral_angle_3_deg 12.023 r_sphericity_bonded 9.459 r_dihedral_angle_1_deg 7.546 r_long_range_B_refined 3.243 r_long_range_B_other 3.028 r_rigid_bond_restr 2.664 r_scangle_other 2.577 r_scbond_it 2.172 r_scbond_other 2.168 r_mcangle_other 2.159 r_mcangle_it 2.158 r_angle_refined_deg 1.785 r_mcbond_it 1.637 r_mcbond_other 1.62 r_angle_other_deg 0.904 r_chiral_restr 0.082 r_bond_refined_d 0.009 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 936 Nucleic Acid Atoms Solvent Atoms 110 Heterogen Atoms 48
Software Software Software Name Purpose REFMAC refinement iMOSFLM data reduction Aimless data scaling PHASER phasing