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Human GSTO1-1 complexed with ML175
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1EEM PDB entry 1EEM
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.6 298 1.0-1.2 M ammonium sulfate, 50 mM sodium acetate, pH 4.6
Crystal Properties Matthews coefficient Solvent content 2.38 48.34
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.103 α = 90 b = 57.103 β = 90 c = 139.613 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate 2016-01-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.25 50 98.4 0.027 0.997 57.84 5.2 12979 26.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.25 2.33 97.4 0.13 0.991 13.51 5.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 1EEM 2.25 49.45 12277 686 98.59 0.17314 0.16988 0.1779 0.23266 0.2364 RANDOM 38.415
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.44 0.22 0.44 -1.42
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.354 r_dihedral_angle_4_deg 21.111 r_dihedral_angle_3_deg 16.994 r_dihedral_angle_1_deg 6.939 r_long_range_B_refined 5.659 r_long_range_B_other 5.61 r_scangle_other 3.061 r_angle_refined_deg 2.291 r_mcangle_it 2.277 r_mcangle_other 2.277
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.354 r_dihedral_angle_4_deg 21.111 r_dihedral_angle_3_deg 16.994 r_dihedral_angle_1_deg 6.939 r_long_range_B_refined 5.659 r_long_range_B_other 5.61 r_scangle_other 3.061 r_angle_refined_deg 2.291 r_mcangle_it 2.277 r_mcangle_other 2.277 r_scbond_it 1.984 r_scbond_other 1.96 r_mcbond_it 1.445 r_mcbond_other 1.438 r_angle_other_deg 1.19 r_chiral_restr 0.142 r_bond_refined_d 0.024 r_gen_planes_refined 0.012 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1926 Nucleic Acid Atoms Solvent Atoms 147 Heterogen Atoms 33
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling PHASER phasing