☰ Navigation Tabs
bovine GRK2 in complex with human Gbetagamma subunits and CCG258208 (14as)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3V5W
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 277 100 mM MES, 0.2 M NaCl, 8-10% PEG3350
Crystal Properties Matthews coefficient Solvent content 3.34 63.17
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 189.012 α = 90 b = 74.15 β = 115.46 c = 123.175 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 9M 2015-07-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-D 0.97857 APS 21-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.03 30 98.5 0.119 0.129 0.998 12.84 6.942 29942 -3 69.782
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.03 3.21 96 0.932 1.007 0.894 1.98 7.055
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3V5W 3.03 30 28446 1479 98.65 0.1997 0.1971 0.198 0.2516 0.2463 RANDOM 104.392
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.66 1.03 -1.53 0.83
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.175 r_dihedral_angle_4_deg 17.036 r_dihedral_angle_3_deg 16.13 r_dihedral_angle_1_deg 7.073 r_angle_refined_deg 1.563 r_angle_other_deg 0.987 r_chiral_restr 0.081 r_bond_refined_d 0.012 r_gen_planes_refined 0.006 r_bond_other_d 0.002
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.175 r_dihedral_angle_4_deg 17.036 r_dihedral_angle_3_deg 16.13 r_dihedral_angle_1_deg 7.073 r_angle_refined_deg 1.563 r_angle_other_deg 0.987 r_chiral_restr 0.081 r_bond_refined_d 0.012 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8175 Nucleic Acid Atoms Solvent Atoms 23 Heterogen Atoms 42
Software Software Software Name Purpose XSCALE data scaling PDB_EXTRACT data extraction REFMAC refinement