X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2WVY 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP5.52912.25 M (NH4)2SO4, 0.1M Bis-Tris
Crystal Properties
Matthews coefficientSolvent content
3.4764.52

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 130.003α = 90
b = 161.711β = 90
c = 208.404γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 315r2015-11-05MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRL BEAMLINE BL7-10.97531SSRLBL7-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.15127.7699.90.10314.47.5237386

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2WVY2.15127.762253811185599.890.1980.19680.2212RANDOM35.789
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.229
r_dihedral_angle_4_deg20.34
r_dihedral_angle_3_deg13.383
r_dihedral_angle_1_deg6.225
r_mcangle_it3.118
r_mcbond_it2.05
r_mcbond_other2.048
r_angle_refined_deg1.225
r_angle_other_deg0.94
r_chiral_restr0.076
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.229
r_dihedral_angle_4_deg20.34
r_dihedral_angle_3_deg13.383
r_dihedral_angle_1_deg6.225
r_mcangle_it3.118
r_mcbond_it2.05
r_mcbond_other2.048
r_angle_refined_deg1.225
r_angle_other_deg0.94
r_chiral_restr0.076
r_bond_refined_d0.009
r_gen_planes_refined0.006
r_bond_other_d0.004
r_gen_planes_other0.004
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms21913
Nucleic Acid Atoms
Solvent Atoms1364
Heterogen Atoms148

Software

Software
Software NamePurpose
REFMACrefinement
SCALAdata scaling
PHASERphasing
PDB_EXTRACTdata extraction
XDSdata reduction