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Galectin-3c in complex with thiogalactoside derivate
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 298 19.2 mg/mL GALECTIN-3C, 100mM NaCl, 0.1 M TRIS/HCL, pH 7.5, 30 % PEG 4000, 0.4 M NaSCN, 0.1M MgCl2, 10 mM BETA-MERCAPTOETHANOL, 4.9 mM INHIBITOR COMPOUND
Crystal Properties Matthews coefficient Solvent content 2.1 41.43
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 36.19 α = 90 b = 58.15 β = 90 c = 62.81 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2013-08-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MAX II BEAMLINE I911-2 1.000 MAX II I911-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.2 30 99.7 0.057 19.3 5.5 42317 9.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.2 29.07 40200 2116 99.78 0.10412 0.10264 0.13195 0.1454 RANDOM 12.979
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.23 0.39 -0.16
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 44.796 r_dihedral_angle_2_deg 34.833 r_sphericity_bonded 17.38 r_dihedral_angle_4_deg 13.641 r_long_range_B_other 13.479 r_long_range_B_refined 13.471 r_dihedral_angle_3_deg 13.073 r_dihedral_angle_1_deg 7.822 r_rigid_bond_restr 5.376 r_scangle_other 3.327
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 44.796 r_dihedral_angle_2_deg 34.833 r_sphericity_bonded 17.38 r_dihedral_angle_4_deg 13.641 r_long_range_B_other 13.479 r_long_range_B_refined 13.471 r_dihedral_angle_3_deg 13.073 r_dihedral_angle_1_deg 7.822 r_rigid_bond_restr 5.376 r_scangle_other 3.327 r_scbond_it 3.216 r_scbond_other 3.205 r_angle_refined_deg 2.522 r_mcangle_it 1.859 r_mcangle_other 1.859 r_mcbond_other 1.431 r_mcbond_it 1.429 r_angle_other_deg 1.318 r_chiral_restr 0.152 r_bond_refined_d 0.026 r_gen_planes_refined 0.015 r_gen_planes_other 0.007 r_bond_other_d 0.003 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1106 Nucleic Acid Atoms Solvent Atoms 229 Heterogen Atoms 48
Software Software Software Name Purpose REFMAC refinement