☰ Navigation Tabs
Crystal Structure of the Pseudomonas functional amyloid secretion protein FapF - R157A mutant
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5O65
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 0/05 - 0.1 M sodium citrate, 0.1 M sodium chloride, 20-30 % PEG400
Crystal Properties Matthews coefficient Solvent content 4.02 69.42
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 80.587 α = 87.09 b = 125.708 β = 84.7 c = 142.667 γ = 89.92
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2016-09-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.9795 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.08 91.7 99.02 0.103 3.49 3.35 94515
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.08 3.13 97.1 0.5 1.2 3.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5065 3.08 91.73 94515 4983 96.44 0.32175 0.31919 0.3336 0.3695 0.3792 RANDOM 44.567
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -7.48 0.83 0.41 -0.52 1.01 8
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.631 r_dihedral_angle_3_deg 17.966 r_dihedral_angle_4_deg 15.718 r_dihedral_angle_1_deg 7.897 r_long_range_B_refined 6.466 r_long_range_B_other 6.466 r_scangle_other 4.042 r_mcangle_it 3.937 r_mcangle_other 3.937 r_scbond_it 2.339
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.631 r_dihedral_angle_3_deg 17.966 r_dihedral_angle_4_deg 15.718 r_dihedral_angle_1_deg 7.897 r_long_range_B_refined 6.466 r_long_range_B_other 6.466 r_scangle_other 4.042 r_mcangle_it 3.937 r_mcangle_other 3.937 r_scbond_it 2.339 r_scbond_other 2.339 r_mcbond_it 2.321 r_mcbond_other 2.321 r_angle_refined_deg 1.543 r_angle_other_deg 0.963 r_chiral_restr 0.088 r_bond_refined_d 0.011 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 23665 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 107
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling MOLREP phasing