☰ Navigation Tabs
X-ray crystal structure of an AA9 LPMO
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5ACH
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 3.5 298 3.3 M NaCl, 0.1 M citric acid pH3.5,
(Soaked in pH 5.5)
Crystal Properties Matthews coefficient Solvent content 3.24 62.07
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 125.29 α = 90 b = 125.29 β = 90 c = 125.29 γ = 90
Symmetry Space Group P 41 3 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2016-02-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID30B 0.96862 ESRF ID30B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.48 50 100 0.133 1 24.72 37.59 56345 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.48 1.52 100 3.24 0.577 25.33
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5ACH 1.48 50 53456 2860 99.99 0.12566 0.12317 0.1409 0.17043 0.1835 RANDOM 26.077
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.904 r_sphericity_bonded 19.842 r_dihedral_angle_4_deg 11.282 r_dihedral_angle_3_deg 9.671 r_long_range_B_refined 8.525 r_long_range_B_other 8.524 r_rigid_bond_restr 7.924 r_dihedral_angle_1_deg 6.566 r_scangle_other 6.499 r_scbond_it 5.617
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.904 r_sphericity_bonded 19.842 r_dihedral_angle_4_deg 11.282 r_dihedral_angle_3_deg 9.671 r_long_range_B_refined 8.525 r_long_range_B_other 8.524 r_rigid_bond_restr 7.924 r_dihedral_angle_1_deg 6.566 r_scangle_other 6.499 r_scbond_it 5.617 r_scbond_other 5.617 r_mcangle_it 4.842 r_mcangle_other 4.841 r_mcbond_it 4.439 r_mcbond_other 4.386 r_angle_refined_deg 2.337 r_angle_other_deg 1.206 r_chiral_restr 0.144 r_bond_refined_d 0.026 r_gen_planes_refined 0.013 r_bond_other_d 0.004 r_gen_planes_other 0.003 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_sphericity_free
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1788 Nucleic Acid Atoms Solvent Atoms 601 Heterogen Atoms 168
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling REFMAC phasing