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Structure of the [4Fe-4S] form of the NO response regulator NsrR
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.9 293 NaCl, tetraethyleneglycol monomethyl ether, HEPES, anaerobic
Crystal Properties Matthews coefficient Solvent content 2.39 48.43
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 78.76 α = 90 b = 78.76 β = 90 c = 93.26 γ = 120
Symmetry Space Group P 65 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2015-12-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 0.984 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 39.38 99.8 0.036 0.016 0.998 21 8.4 12994
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 2.02 99.5 2.171 0.81 0.509 1 8.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.95 30 12307 671 99.77 0.19646 0.19491 0.2003 0.2271 0.2302 RANDOM 95.124
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.36 -0.18 -0.36 1.17
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.104 r_dihedral_angle_4_deg 20.612 r_dihedral_angle_3_deg 15.272 r_long_range_B_refined 8.514 r_long_range_B_other 8.496 r_dihedral_angle_1_deg 6.043 r_scangle_other 4.833 r_mcangle_it 4.267 r_mcangle_other 4.264 r_scbond_it 3.016
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.104 r_dihedral_angle_4_deg 20.612 r_dihedral_angle_3_deg 15.272 r_long_range_B_refined 8.514 r_long_range_B_other 8.496 r_dihedral_angle_1_deg 6.043 r_scangle_other 4.833 r_mcangle_it 4.267 r_mcangle_other 4.264 r_scbond_it 3.016 r_scbond_other 3.007 r_mcbond_other 2.794 r_mcbond_it 2.792 r_angle_other_deg 1.798 r_angle_refined_deg 1.511 r_chiral_restr 0.109 r_bond_refined_d 0.012 r_gen_planes_refined 0.009 r_gen_planes_other 0.004 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1016 Nucleic Acid Atoms Solvent Atoms 31 Heterogen Atoms 14
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHENIX phasing